Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015876118.1_cds_XP_016436016.1_31918
CDS Infomation

[gene=LOC107762194] [db_xref=GeneID:107762194] [protein=putative rRNA methyltransferase] [protein_id=XP_016436016.1] [location=join(2874..3347,4957..5004,5088..5243,5400..5446,6867..7023,7111..7172,7318..7513,8194..8283,8800..8939,9030..9156,9877..10887)] [gbkey=CDS]
Sequence

ATGGGAAAAGTGAAAGGAAAGCATCGTTTGGACAAGTACTACCATTTAGCCAGAGATCAC
GGTTACCGTTCAAGAGCAGCATGGAAATTAGTCCAACTCGATTCCAAATTTTCTTTTCTC
CGTTCATCTTCCGCAGTTCTCGATCTTTGTGCAGCACCAGGTGGTTGGATGCAAGTCGCT
TTAAAGAATGTACCCGTTGGCAGTCTTGTTCTTGGCGTTGATTTAGTCCCAATTAAACCA
CTTCGTGGTGGTATATGTATTCAAGAGGATATTACGACCCCTAAATGTCGTGCGACTATT
AAAAGAATAATGGCTGAAAATGGGCGTAGAGCTTTTGATTTGGTACTTCATGATGGGTCT
CCTAATGTTGGTGGTGCTTGGGCTAAAGAAGCTACTAGTCAGAATTCTTTGGTTATTGAT
TCTGTTAAGCTTGCTACTGAATTGTTGGCTCCTAAAGGCACTTTTATTACTAAGATTTTC
AGATCTCAAGATTATAACGCAGTTCTTTACTGTCTAAGACAGCTTTTTGAGAAGGTTGAG
GTGGACAAACCTCTGGCAAGTCGTTCAGCATCTGCAGAAATTTATATTATAGGTTTAAAA
TATAAAGCTCCTGCGAAGATTGATCCACGACTTCTTGATGTAAAGCACCTCTTTCAAGGA
GGTCAAGACCCCCCCAAGGTGATTGACGTACTCAGGGGGTCGAAGCAGAAGAGACATCGT
GATGGGTATGAAGATGGAGCCACAATTTTAAGGAAAGTTTGCTCAGTTGCAGATTTTGTT
TGGTCTGATAACCCTGTTCATATCCTTGGTTCATTTACTTCAATGAGCTTTGATGATCCC
GCTTGTTTGCCCATTAGAGATCATGCTCTTACAACAGAGGAGGTTAAAGCTCTATGTGAT
GATTTGTGTCTTCTTGCAAAGCAAGACTTCAAGCATCTCTTAAAGTGGCGTATGCAGATA
AGAAAAGCTTTATCTCCTGAAAAGATTAAGACCCCAATAGCTGTTGTTGAAAGTGAGAAC
AAAGAAGACGAAGACGAAGATGAAGATGAACGAGTTCTTAATGAAATAGAGGAGAGAACC
AATATCGTGGAGAGAAGGCAGAAAAAAGAGAAGAAACTTCAAGCAAAAAGACGAGCCAAG
GAGAAAGCACGCAAGGCACTTGGGATTCAAGTAGATGCAACAGAGGATGGTTATGGTGAT
CAGGATTTGTTTTCTCTATCTTCCATCAAGGGAAAGAAAGATCTCGTAGCTGTTGATAAC
AGTGAAAATGACAAAGGAACTACTGAGGTAAGCGACGAAAATGATGGAAGTGATGAGGAA
GCCGAGGAGCATTCCTCCAGTGATCTGGACTCTGAAGACGAACGTAAAAGACATGATGAA
AATATAGAGGCATTGTTTGATGAGGCTTACGAACGGTATTTGGGTAGAGTGGAAGGAAAA
TCAAAGCAGAGAAAGCGAACCAAACAAGCGTACTTGAAGGATGGTCCACTCATGCAGGAT
GGCAATGATGATAGCATGACTCATTCTGCTCCGGACTCTGACAGTGACAAGGAAGATAAT
GAAGTCAACCCTCTTGTTGTACCCCTCGAGGATGCACCACCGCCTCAGGAGGAGATTGTG
AAAAAGTGGTTTACACAAGATGTTTTTGATGAAGAGGAAGAGCAAGATATCCTGGACAAG
TATGATAGTGAAGATGAAATGCAAATAGATGGAGGGGCGGAGAAAGCCCTAAAATCTAAG
GAGCTGACAAATGATAAACAGCAGGGAGAAACTAAGGATCTCACAAGGAAAACAAATGGC
GGTTTACAAGTCTCAGCATCCAAGACAGAAGATGATTTTGAGATTGTTCCTGCTCCTGCT
ACTGATTCAAGTGACTCGTCATCCGATGAATCAGATGACGATATTGACACAAAAGCTGAA
ATATTAGCTACAGCGAAGAGGATGCTGAGGAAAAGGCCTAGGGAAGATATGATTGATGAT
GGTTACAACAGGTATATGTTTCATGATGAGGGGTTGCCAAAGTGGTTCCTTGATGAGGAA
ATGAGACATCGCCAGCCAGAGAAACCCGTGACAAAAGAGGAGATTGCTGCAATGAAAGCT
CAATTTAAAGCAATTGATGCTCGGCCTGCAAAGAAGGTAGCAGAAGCCAAAGCTCGTAAG
AAACGGGCAGCACATAGAAAGCTAGAGAAGGTTCGGAAGAAAGCTAACTCAATATCAGAC
CAAGCTGATATTAACGATCGTTCAAAGAGAAAAATGATTGAACAGCTATACAAAAAGGCG
GTAACACCAAAAAAACCAGAAAGGGAATATGTGGTGGCAAAGAAGGGTGTTCAAGTTAAG
GTTGGCAAGGGGAAAGTCCTTGTCGATCCACGAATGAAAAAAGATGCTAGAAAGCATGGA
ATGAACAAGAAGAAGCAGCAGGGCAAGGGAAAGAAGGGTAAACAAACAGGAAAAGGCTCA
GGGAAGGCTTCGGCGGCAGCAGGCAAGAAGGGAAACCGGGGAAAATGA

Peptide Sequence

PEP ID

XP_016436016.1
PEP Infomation

PREDICTED: putative rRNA methyltransferase [Nicotiana tabacum]
Sequence

MGKVKGKHRLDKYYHLARDHGYRSRAAWKLVQLDSKFSFLRSSSAVLDLCAAPGGWMQVA
LKNVPVGSLVLGVDLVPIKPLRGGICIQEDITTPKCRATIKRIMAENGRRAFDLVLHDGS
PNVGGAWAKEATSQNSLVIDSVKLATELLAPKGTFITKIFRSQDYNAVLYCLRQLFEKVE
VDKPLASRSASAEIYIIGLKYKAPAKIDPRLLDVKHLFQGGQDPPKVIDVLRGSKQKRHR
DGYEDGATILRKVCSVADFVWSDNPVHILGSFTSMSFDDPACLPIRDHALTTEEVKALCD
DLCLLAKQDFKHLLKWRMQIRKALSPEKIKTPIAVVESENKEDEDEDEDERVLNEIEERT
NIVERRQKKEKKLQAKRRAKEKARKALGIQVDATEDGYGDQDLFSLSSIKGKKDLVAVDN
SENDKGTTEVSDENDGSDEEAEEHSSSDLDSEDERKRHDENIEALFDEAYERYLGRVEGK
SKQRKRTKQAYLKDGPLMQDGNDDSMTHSAPDSDSDKEDNEVNPLVVPLEDAPPPQEEIV
KKWFTQDVFDEEEEQDILDKYDSEDEMQIDGGAEKALKSKELTNDKQQGETKDLTRKTNG
GLQVSASKTEDDFEIVPAPATDSSDSSSDESDDDIDTKAEILATAKRMLRKRPREDMIDD
GYNRYMFHDEGLPKWFLDEEMRHRQPEKPVTKEEIAAMKAQFKAIDARPAKKVAEAKARK
KRAAHRKLEKVRKKANSISDQADINDRSKRKMIEQLYKKAVTPKKPEREYVVAKKGVQVK
VGKGKVLVDPRMKKDARKHGMNKKKQQGKGKKGKQTGKGSGKASAAAGKKGNRGK

Transcript Sequence

Gene sequence data has not been registered.